YSI EXO
Data will generally be processed using a series of run scripts. The first script for each instrument type depends on two configuration files.
Instrument data to raw .cdf
Convert from exported .csv file from KOR software to a raw netCDF file with .cdf extension using runexocsv2cdf.py
.
runexocsv2cdf.py
Convert EXO .csv file to raw .cdf format. Run this script from the directory containing EXO file.
usage: runexocsv2cdf.py [-h] gatts config
Positional Arguments
- gatts
path to global attributes file (gatts formatted)
- config
path to instrument configuration file (YAML formatted)
Raw .cdf to CF-compliant .nc
Convert the raw .cdf data into an CF-compliant netCDF file with .nc extension using runexocdf2nc.py
, optionally including atmospheric correction of the pressure data.
runexocdf2nc.py
Convert raw EXO .cdf format to processed .nc files
usage: runexocdf2nc.py [-h] [--atmpres ATMPRES] cdfname
Positional Arguments
- cdfname
raw .cdf filename
Named Arguments
- --atmpres
path to cdf file containing atmopsheric pressure data